PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00845.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 689aa    MW: 74787.5 Da    PI: 10.3304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00845.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.3e-09198245455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Zpz_sc00845.1.g00120.1.am.mk 198 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 245
                                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.83E-9192249No hitNo description
SuperFamilySSF474595.63E-15192255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14194250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6198245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MESRPASGDY IASLLSSSPR LDFGVLGGVS VLDGAAGRDG GDSLEKFCGD PGFAERAARL  60
SSFSGERFAG AAGLFGLPPP ALAASNGGSR ETSSVSDPAS AMRDANAKKR KAPAPLKGKG  120
KESSSQTGEQ NDSDAKRCKT DGVEKECSPV KPKAEQAGSD ISVEDNGQKP GKGKNAKPVE  180
PPKDYVHVRA RRGQATDSHS LAERVRRERI SQRMKVLQDL VPGCNKVIGK ALMLDEIINY  240
VQSLQRQVEQ RNFWEEDLPG VFHIENGQSQ ENGVSAQSFH GYASLFYDDP SLLAGSHCSS  300
CTPNLLLLHT DDPKVLDIPT QLVYNSTAQH KALVWNGANV AASGRVFVAF LRFMCSFNRD  360
PAEKPPYFTA NFAVRFGVAL AARFLLPGKR RGNLVVFHLD SLKVKRRYYE APNFRRASKT  420
AGRRRAAFNA MPGHFPPPSL YVSASTLCCM ETRGNAGCGS GVVLDRVPPV RRSTLQYGFS  480
RPASAIGVNR RRGARTATRA VQHALHIASA RTLMSHENGA DRINIGHEAR RVRCHDGRPT  540
RSRSGQRSCL DGHGVVEISP SKIPSPRAGV PLLRRRRGCG PATITATDRE VDGGNESWSV  600
YTAPTNNPSA FSCQRHCTLD LRVWPVLHAT RTLLAGYRLD EASLTRVTRS RMKKTRLPSA  660
CMDDARAPWV WDREAASPST AVLDRATHA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00845.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675805e-93AK367580.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B18.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3545634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-45bHLH family protein