PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00855.1.g00030.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 813aa    MW: 87710.2 Da    PI: 9.4169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00855.1.g00030.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12117165455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zpz_sc00855.1.g00030.1.sm.mkhc 117 SHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVNYIKELQ 165
                                     799***********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-15116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-10117165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12117177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-12117169No hitNo description
SMARTSM003533.6E-11119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034693Cellular ComponentU11/U12 snRNP
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MAEVLCDLLF ADDDVVNGEL LQHPADADDL FGILQEWEDC VSGGSVEAAL SSAADAATPT  60
SVAAKGNKRR SPQGRCDDSV LVQEPAKKQR CSPPAVAVVA ATTGEGGATK TATTSHSHIA  120
VERNRRKQMN EHLAVLRSLM PCFYVKRGDQ ASIIGGVVNY IKELQQLRQS LEAKKQRKAY  180
ADQLVLSPRR PLPLKTTPPM SPRPAVPIIS PRTPPTSSSP YSTLRRQPSL PLLHLPLPLP  240
PPRGSSAYES PAMTPTSQES AASSSSSSSY LPSLDAIAAE LCAYTANSKQ ATASGGAVVL  300
PEVKVEFSGA NLVVKTASQR APGQAVKVIA ALEGRSSLEI LHAKISTVDD TAVNSFTIKL  360
VTRKHQGLEI CGNLGPAWRI ASFGLWAPTT SSAQREKLRS PSPAESAGRI WAVLVICIRT  420
HHADGPIEPA ADPSPLRPAP RRRLQLSTAG GRGRAAESCV RGQMSSGGMN AVFYADKYHP  480
IQAGSIDGTD IAPHDNAVLR ALICSQAGLY DPFGDPKATG DPYCTLFVGR LSRQTDDEML  540
RKDAHHSVID GSEVIVDYYR QQLMPGWIPR RLGGGLGGKK ESGQLRFGGR ERPFRAPLRP  600
IPYDELKKLG IPPPPEGRFH HHPDVKLAAM TGKIHLRGGD PGTDWMIVAT EDREVQPKMA  660
TGREAAMTDE KNHKAGLVKD HPLPGRKSGP ADREKQWEMM MVVASGGEEA ENQVKYLQRR  720
MVATEEKKLH LNLNKALIST VTTGITESRD MRADTLSTGT VGITTVMVTP REVRATITAA  780
RYGAAYVNLN RMFQGVKLNC WCTLLDLIGL NVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00855.1.g00030.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667502e-83BT066750.1 Zea mays full-length cDNA clone ZM_BFb0065E21 mRNA, complete cds.
GenBankEU9533462e-83EU953346.1 Zea mays clone 1400990 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP965722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-32bHLH family protein