PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00856.1.g00020.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 582aa    MW: 63187.1 Da    PI: 10.207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00856.1.g00020.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.3e-17246291454
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                      hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksL
  Zpz_sc00856.1.g00020.1.am.mkhc 246 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYMKSL 291
                                     5*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.90E-16237296No hitNo description
SuperFamilySSF474591.02E-19240304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.406242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-21246301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-14246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDCNARSSAA SQKKPIIADS DLVELLWHNG SVVAQPQAHQ PAAPPPSDRP SSSGLTGEET  60
AAWFPDTLDD ALEKDLYTQL WYSAIADASP QPGDAIPGPR SQPPLGMAHP ARPPVGSGVE  120
SSWAGDICSA FCGRNQVFSG VPAGDRAEDT ALPSEPAPCG TSTRDGAGTG TSSSGGSGSN  180
FGGSRLRSDS GHAHKKRGRC RDDTDSRSEV FLELTRKLQA VECEATEVTK SSRRHGSKRR  240
TRTAEVHNLS ERRRRDRINE KMRALQELIP HCNKTDKASI LDEAIEYMKS LKMQVQMQNI  300
HLREVSNPFL YPDGEQTAAP EVPRSHGYGT QTAQTAQPNR IPELPGPHGY GTQTAQTAQF  360
SRIPKARALQ RRVRRESGPV HATRPAQSMQ RPGGTCGCRD ERRGDTPNSP ANTGCRDRGL  420
KPGARARALQ RRVRRESGPV HATRPAQSMQ RPGGTCGCRD ERRGDTPNSP ANTGCRDRGL  480
KPGARVTHDE ENRDAGRHPR RPARHSSLWS TLTGHHRRGP IGSIVCCENK TDDGYPPSPS  540
IANTRGPVSA RASNRKAATP PFTQLAQNKR HPAQLLRCHD QK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237254KRRTRTAEVHNLSERRRR
2250255ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00856.1.g00020.1.am.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981539.11e-112transcription factor PIF4 isoform X1
RefseqXP_004981540.11e-112transcription factor PIF4 isoform X1
RefseqXP_012704121.11e-112transcription factor PIF4 isoform X1
SwissprotQ10CH51e-81PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A1E5URH31e-117A0A1E5URH3_9POAL; Transcription factor PIF5
STRINGPavir.Ia00490.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-28phytochrome interacting factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]