PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00857.1.g00020.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 250aa    MW: 26660.4 Da    PI: 6.6967
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00857.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.83.7e-5432127297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdr++Pianv+rim++vlPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvep
  Zpz_sc00857.1.g00020.1.sm.mk  32 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEP 112
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   l+vyl++yre+ege 
  Zpz_sc00857.1.g00020.1.sm.mk 113 LSVYLHRYREFEGEA 127
                                   ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-4925135IPR009072Histone-fold
SuperFamilySSF471132.33E-3834143IPR009072Histone-fold
PfamPF008083.8E-2538101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.1E-176583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.1E-1784102No hitNo description
PRINTSPR006157.1E-17103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDSIFPAGAT ANGGNNGGGG GAQGQQAAPA IREQDRLMPI ANVIRIMRRV LPAHAKISDD  60
AKETIQECVS EYISFITGEA NERCQREQRK TITAEDVLWA MSRLGFDDYV EPLSVYLHRY  120
REFEGEARGV VGAARGGGGG VDHHHHHQMF NSRAPATAHH HDMQVHAAMY GGAAVPPHHG  180
FAAPPPHQGQ YMPMPYPYDT YGGEHAMAAY YGAGAYGPGN GGDGSGGSAS HTSQAGGTSS  240
LEHQHPFAYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-6130122597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00857.1.g00020.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432571e-151AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953763.11e-95nuclear transcription factor Y subunit B-2
TrEMBLA0A2T7FBI65e-98A0A2T7FBI6_9POAL; Uncharacterized protein
STRINGSi020091m4e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-59nuclear factor Y, subunit B6