PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00866.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 264aa    MW: 29252.7 Da    PI: 8.5828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00866.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-101261154
                                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                    r++ +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  Zpz_sc00866.1.g00060.1.sm.mkhc 12 RKVQKADREKMRRDKLNEQFQELGNALDPD----RPRNDKATILGDTIQMLKDL 61
                                    5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-131084IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-141081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.8171161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-71265No hitNo description
PfamPF000108.0E-81261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-71767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MECQAQGSTA ARKVQKADRE KMRRDKLNEQ FQELGNALDP DRPRNDKATI LGDTIQMLKD  60
LTSQVNKLKA EYTSLSEEAR ELTQEKNELR DEKASLKSDV GNLNNQYQQR MRVMYPWAGM  120
EPSVVIGPPV PYPYPVPVHI PSGAVPMHPQ MQAYPFFRSQ TSGTIPSPYM AYTQPCHPPT  180
YQPSNQLNTQ VPHSSSHRSN SPAQDCRSKS STLQQESCGG KNSDVGDVAS DLELKTPGSS  240
APSHSDIAKG VRTPLLTQKQ KSNA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00866.1.g00060.1.sm.mkhc
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458163.11e-150transcription factor bHLH121 isoform X2
SwissprotQ9LT234e-73BH121_ARATH; Transcription factor bHLH121
TrEMBLC5XR281e-148C5XR28_SORBI; Uncharacterized protein
STRINGSb03g028030.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.16e-74bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]