PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00876.1.g00180.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 207aa MW: 22209.3 Da PI: 9.5527

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00876.1.g00180.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.4e-08	25	90	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C................TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as.............kapskK.lsKaeiLekAveYIksL 54 + +E++RR +++ +L +l+P+ a ++p+k ++ + L A YIk+L Zpz_sc00876.1.g00180.1.am.mk 25 ERKDVEKNRRLHMKGLCLKLSSLVPPsAAakhaalrsapassSNPNKDtVTQLDHLDNAAAYIKHL 90 56789*******************555*********7777777**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.369	21	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-11	23	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-9	23	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	25	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MKSRRQSGSA AAGEGTAHSG HNKMERKDVE KNRRLHMKGL CLKLSSLVPP SAAAKHAALR 60 SAPASSSNPN KDTVTQLDHL DNAAAYIKHL TERIEELRQR KGSSSRHALS APTAAAGDVR 120 MPVIEVRCQD GALEAVLVSA AERPFRMHEV VAVLEQEGAE VVSASFSVVG DKVFYTVHSQ 180 ALISAGVEGL DVARVADRLR GLLLVEY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00876.1.g00180.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967963.1	4e-82	transcription factor bHLH168
TrEMBL	K3XLS4	1e-80	K3XLS4_SETIT; Uncharacterized protein
STRING	Si002847m	2e-81	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	2e-16	bHLH family protein