PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00885.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 313aa    MW: 32600.1 Da    PI: 8.2166
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00885.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.72.7e-153393257
                                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                    r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Zpz_sc00885.1.g00010.1.sm.mkhc 33 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 93
                                    89*****************99*************************************997 PP
2Wus_type_Homeobox106.91.2e-343295265
               Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                    +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  Zpz_sc00885.1.g00010.1.sm.mkhc 32 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 95
                                    589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-928100IPR009057Homeodomain-like
PROSITE profilePS5007111.3372994IPR001356Homeobox domain
SuperFamilySSF466898.13E-1429101IPR009057Homeodomain-like
SMARTSM003891.2E-63198IPR001356Homeobox domain
PfamPF000465.0E-133393IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGSSNSPDR QSSGGSPEER GSGERQGSRE PVRSRWTPKP EQILILESIF NSGMVNPPKD  60
ETVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA AAAAAAAAAS SAANSHTAAA  120
SVALGVPSSG AAVHHPSAMG GSACRYEQQA SSSSSSGSTG GSSLGLFAFG AGVSGGTGGG  180
YFQTSCGASS PLGSGLIGDV DSGGGDDLFA ISRQMGFAES TVAPSSSLVP STAAQQQPQQ  240
YYSSQQLPTA TITVFINGVP MEVPRGPIDL RAMFGQDVML VHSTGTFLPV NDYGILTQSL  300
QMGESYFLVT RPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00885.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984518.21e-136WUSCHEL-related homeobox 6
SwissprotA2XG771e-105WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBLA0A368SRG41e-135A0A368SRG4_SETIT; Uncharacterized protein
STRINGPavir.Ia03448.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.23e-32WUSCHEL related homeobox 12