PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00896.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 156aa    MW: 17857.3 Da    PI: 9.5985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00896.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.91.9e-40481562108
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                    pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg
  Zpz_sc00896.1.g00010.1.am.mk  48 LPGFRFHPTDEELVSFYLRRKVARKPLSV-EIIKEMDIYKHDPWDLPeASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSG 127
                                   69***************************.89***************557777899************************* PP

                           NAM  82 yWkatgkdkevlsk..kgelvglkktLvf 108
                                   +Wkatg d++++s+  +g+ +glkk+Lv+
  Zpz_sc00896.1.g00010.1.am.mk 128 FWKATGIDRPIYSAtsSGKSIGLKKSLVY 156
                                   ************99888899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4246156IPR003441NAC domain
PROSITE profilePS5100542.62447156IPR003441NAC domain
PfamPF023653.6E-1849156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MRRWPRRWGW PPVGEGEFAR EAVSLDKVKS DGEALMAAGD GEEDDVVLPG FRFHPTDEEL  60
VSFYLRRKVA RKPLSVEIIK EMDIYKHDPW DLPEASTAGG EKEWYFFCLR GRKYRNSIRP  120
NRVTGSGFWK ATGIDRPIYS ATSSGKSIGL KKSLVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-37401568120Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00896.1.g00010.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555793e-94BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds.
GenBankHQ8586893e-94HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795725.17e-91transcription factor JUNGBRUNNEN 1-like
SwissprotQ9ZVH02e-55FEZ_ARATH; Protein FEZ
TrEMBLA0A2S3IHK92e-89A0A2S3IHK9_9POAL; Uncharacterized protein
TrEMBLA0A2T7C0E42e-89A0A2T7C0E4_9POAL; Uncharacterized protein
TrEMBLA0A3L6TSA43e-90A0A3L6TSA4_PANMI; Transcription factor JUNGBRUNNEN 1
STRINGSi036447m9e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-54NAC domain containing protein 42
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]