PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00906.1.g00160.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 191aa MW: 19524 Da PI: 8.8954

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00906.1.g00160.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	90.6	1.3e-28	73	130	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l+cprC s++tkfCy+nny++ qPr++C+aC ryWt+GGalr v ++ r++ +s Zpz_sc00906.1.g00160.1.am.mk 73 EPLPCPRCGSRETKFCYFNNYNVRQPRHLCRACSRYWTAGGALRCVTTASSGRRRPRS 130 5789******************************************988766665444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-19	73	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-25	74	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.024	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDADAAGFKL FGKVIQPPDA HQRTAEESVA TPPPPPPPPP ESMTPSQTLP TLPPSLPAAA 60 AAAAPSAAGG TGEPLPCPRC GSRETKFCYF NNYNVRQPRH LCRACSRYWT AGGALRCVTT 120 ASSGRRRPRS SAARSASAAA DAVAASASSA SAADERGARA CVTQCRPILP HASATGRPAC 180 GPAEPSCPFS T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00906.1.g00160.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061655	1e-62	BT061655.1 Zea mays full-length cDNA clone ZM_BFb0169J01 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001167867.2	4e-41	uncharacterized protein LOC100381571
TrEMBL	A0A1D6NG26	8e-40	A0A1D6NG26_MAIZE; Cyclic dof factor 2
STRING	Sb03g030850.1	6e-41	(Sorghum bicolor)
STRING	GRMZM2G327189_P01	1e-40	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	3e-22	Dof family protein