PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00912.1.g00100.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 325aa    MW: 35038 Da    PI: 11.0577
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00912.1.g00100.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.78e-33176231258
                       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     ep++VNaKQy++Il+RRq+Rakle++++l  k rkpylheSRh+hA++R+RgsgGrF
  Zpz_sc00912.1.g00100.1.sm.mkhc 176 EPIFVNAKQYHAILRRRQTRAKLEAQNNL-VKDRKPYLHESRHQHAMKRARGSGGRF 231
                                     8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-36173234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.98174234IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-28176231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-24177199IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-24208231IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MPTERDVAAR GAKWAERDCA SSGSGATGSG LGLPSQLFSS TAAGSLGRAL PFSSSFNPRI  60
RTVAQQQGVL SGNGSRVKQS DLRLHNMDSS SEGGWSHPGA SAMSSSSLNE QTATQSDNNL  120
HGKHGQNMES PPLSLGKQEV AFSAQNSDCS SSFVHPHQNI ISNSSAPLPA EAVAVEPIFV  180
NAKQYHAILR RRQTRAKLEA QNNLVKDRKP YLHESRHQHA MKRARGSGGR FLKTKQLHEQ  240
NQQHQASGNS RSMQVTDQNV SSQSGSTLMP PIPDPPDIAS VSRANQDRSC FPSVGFRPPM  300
NLSMKGGRNT KLVVNGMQHR VSIMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-22176236363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00912.1.g00100.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800585.14e-81nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800586.14e-81nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800587.14e-81nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800588.14e-81nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBLA0A0A9DJ423e-86A0A0A9DJ42_ARUDO; Uncharacterized protein
STRINGPavir.Ba00442.1.p4e-82(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.13e-30nuclear factor Y, subunit A5