PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00914.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 840aa    MW: 89277 Da    PI: 10.4234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00914.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05398420123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+k F r  nL+ H r H
  Zpz_sc00914.1.g00020.1.am.mk 398 FVCEVCNKGFQREQNLQLHRRGH 420
                                   89*******************88 PP
2zf-C2H212.50.00044474496123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zpz_sc00914.1.g00020.1.am.mk 474 WKCDKCNKRYAVQSDWKAHSKTC 496
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5397420IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.7E-7397420No hitNo description
PROSITE profilePS5015711.094398420IPR007087Zinc finger, C2H2
SMARTSM003550.0041398420IPR015880Zinc finger, C2H2-like
PfamPF121715.8E-5398420IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280400420IPR007087Zinc finger, C2H2
SMARTSM00355300439469IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-5462495IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.7E-7469494No hitNo description
SMARTSM00355110474494IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MLATRPEHQS IQPSKAGDHR TPSTPLLVVT QPSKRHTIAS PPCAYQHTLQ TPPGSPHGRE  60
RGEPFPPFSP GFLRGSAAAA VRSATDGRRS AYTHTSRWGP QNIFLVRPSP PARDLLAPPE  120
VAPTRPRGPR DRLLHLPVTH YSLRPEIILD SKAAEQGRGK QQQGRASSRP SCSLAPRVNR  180
SITRRRLSLG FSNRSSRLGW CARLFFSLFP CVCWFVSSDS IPRGIILSGA VVPGCLSSFS  240
PASSPTCLAR RRPGLEFAYF SLHRIDLAED AGSEADRRTV RTMSSPLRDS DCSGKGRSYG  300
GQASASGRVF VCFLGMAAAS SAAFFGLGDT QMQPQAAASS LQQQQNSAAA PGAAAGGAQP  360
KKKRNQPGNP RKSSLYLAHP DAEVIALSPR TLLATNRFVC EVCNKGFQRE QNLQLHRRGH  420
NLPWKLKQKN PKEARRKVYL CPEPTCVHHD PSRALGDLTG IKKHYCRKHG EKKWKCDKCN  480
KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALARESA QLPHLGAGLY  540
VGTGSMALGV SGAAPQMSAV FGNQSQSSSA ATAAQLDHMI TSPSSSSMFR SQASASSSSF  600
FLGGGGGGPS PADQDFSEDG DHSQCSQSSL LHGKTAAAFH GLMQLPEQNQ QGSNANSNLL  660
NLGFFSNNSG GAAGGQDARL VLQDQFNGGG GGNRNAEQRS MMASVENHLS GNFSSLYNSS  720
GSASTGLPQN SATALLLKAA QMGSSTSSNN NSTSALLRAA GFGANAQQGN RAAAEGSAAH  780
ETPFHDLIMN SLARGSGGFS GGTAGLDDDK LSTRDFLGVG RGSMAPLGLH IGALDPAQMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32470535368Zinc finger protein JACKDAW
5b3h_F1e-32470535368Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00914.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548650.0AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957598.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_004957599.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_004957600.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLK3ZSG00.0K3ZSG0_SETIT; Uncharacterized protein
STRINGSi029540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-104indeterminate(ID)-domain 4