PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00915.1.g00250.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 152aa MW: 15978.2 Da PI: 8.0396

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00915.1.g00250.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	73.9	3.1e-23	25	119	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...edamsslvyeAearardPvyGavg 78 +CaaCk +rrkC++dCvlapyfpa++p++fa+v+++FGasnv +ll++ + + ++ + ++ +A a +P Ga + Zpz_sc00915.1.g00250.1.am.mk 25 RCAACKNQRRKCSPDCVLAPYFPASDPRRFACVQRVFGASNVARLLQEEIRAAQselARTQAQIAVHAAAAGAQPAVGARQ 105 6********************************************98555551115555679*************** PP DUF260 79 vilklqqqleqlka 92 ++++ q q +a Zpz_sc00915.1.g00250.1.am.mk 106 LMNAQVQAPPQQQA 119 99987777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.727	24	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-22	25	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MSTSGASTEE ASAASAANPG TGSRRCAACK NQRRKCSPDC VLAPYFPASD PRRFACVQRV 60 FGASNVARLL QEEIRAAQSE LARTQAQIAV HAAAAGAQPA VGARQLMNAQ VQAPPQQQAG 120 DALMMVQQEP CQGLDTLFLD DVRAGVTCLM MI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-17	14	72	1	58	LOB family transfactor Ramosa2.1
5ly0_B	3e-17	14	72	1	58	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00915.1.g00250.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806770.1	1e-37	LOB domain-containing protein 24-like
TrEMBL	A0A3L6TJP8	4e-39	A0A3L6TJP8_PANMI; Uncharacterized protein
STRING	Sb01g005700.1	1e-32	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19720	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	2e-19	LOB domain-containing protein 23