PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00921.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 181aa MW: 20038.4 Da PI: 4.975

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00921.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	71.3	2e-22	24	95	27	98
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 kf++vhk+FGasnv kll+++p++++++a+ s++yeA+ar+ +P yG+++ il+lq q+ +l+ael lk Zpz_sc00921.1.g00040.1.sm.mk 24 VTKFEMVHKIFGASNVAKLLDKIPQQNHPEAVFSICYEAQARLCNPFYGCANQILALQDQVWNLQAELTNLK 95 689****************************************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.073	1	98	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-21	21	94	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGMGAEEEEE EGQWGLQVSA AQGVTKFEMV HKIFGASNVA KLLDKIPQQN HPEAVFSICY 60 EAQARLCNPF YGCANQILAL QDQVWNLQAE LTNLKIHLAE MEHARQSTFV VEPQTSIAKT 120 FPVSSLLAPS NILAIVDHSP LSELETQSQQ HRHLHQQQFV QGRGSVMGNN SDLQENGNST 180 T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-16	26	91	39	104	LOB family transfactor Ramosa2.1
5ly0_B	4e-16	26	91	39	104	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00921.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5UT08	3e-31	A0A1E5UT08_9POAL; LOB domain-containing protein 18

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP72396	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	7e-29	LBD family protein