PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00926.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 433aa    MW: 47080.2 Da    PI: 7.2608
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00926.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-062355335
                      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                                  +r C+ + + +++++C  ++ +lC+ C  + H+
  Zpz_sc00926.1.g00060.1.am.mk 23 ARSCDGCMRRRARWHCPADDAYLCQACDAAVHS 55
                                  578*************************99995 PP
2CCT66.38.7e-23330373144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Zpz_sc00926.1.g00060.1.am.mk 330 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 373
                                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.2712168IPR000315B-box-type zinc finger
SMARTSM003366.6E-72168IPR000315B-box-type zinc finger
CDDcd000212.97E-82468No hitNo description
PfamPF062031.0E-17330372IPR010402CCT domain
PROSITE profilePS5101715.993330372IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MTNAGTAAAA AVATGAALGA RTARSCDGCM RRRARWHCPA DDAYLCQACD AAVHSANPLA  60
RRHLRFRLPT ASSSSALQDP DAPTWLHGLK RGPRTPRSKP GSKHEAMCAT MAAVSSSAVP  120
DLEAEDSGSG IVGDNEHGLE DDDDDLLYRV PVFDPTLAEL YNPTADEGEE QKPACLISSL  180
VETSPDFASG SGQKNELSAF DVPDMELASF AADMESLLMG VEDGLDDLGF LDDEKPQVNV  240
DLGTDLEVAA APAPEREDKK RKRPQMILKL DYEGVIASWA RDGGSLWFHG ERQPHLDPGD  300
SWPDFSVSTT AVIVRGGIVG NVTAVTGGER EARVSRYREK RRTRLFAKKI RYEVRKLNAE  360
KRPRMKGRFV KRTALPQLPQ PSQQQKPQRA PPPAGMVLAP KMGVQCTGAS DFKTRGVRAC  420
KMHHCTCMRP KHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340356RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00926.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0871813e-65AC087181.9 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence.
GenBankAK1205633e-65AK120563.1 Oryza sativa Japonica Group cDNA clone:J013132M18, full insert sequence.
GenBankAP0149593e-65AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-65CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982006.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1E5WFM10.0A0A1E5WFM1_9POAL; Zinc finger protein CONSTANS-LIKE 7
STRINGSi035937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.11e-53B-box type zinc finger protein with CCT domain