PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00927.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 371aa    MW: 40185.3 Da    PI: 8.3983
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00927.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.5e-19128172145
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                                   kri ++ +rqv fskR+ g++KKA+ LS LC+a vav+ fs+ gk
  Zpz_sc00927.1.g00080.1.am.mk 128 KRIASEEKRQVCFSKRKDGLFKKASDLSALCGAHVAVVAFSPGGK 172
                                   79****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.193120180IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-29120179IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-26120191IPR002100Transcription factor, MADS-box
CDDcd002651.00E-32121196No hitNo description
PRINTSPR004043.1E-17122142IPR002100Transcription factor, MADS-box
PfamPF003199.5E-24129176IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-17142157IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-17157178IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVKSEEGQSW AGATRRKTMM AMSHPSHACI VPITKSLEFV LINQSNSQKI FLIPAIHFHA  60
CVSPVLYKHS KPPAAAHSLS LERYYLSLHL DMASRDHSDV SLEAAPAAVM TIGRKRKKTM  120
GRQKIEIKRI ASEEKRQVCF SKRKDGLFKK ASDLSALCGA HVAVVAFSPG GKPFSFGHPS  180
VDALVGRFTD PAAPGAMGPA PVHSALLEEF SREEEFLAKA LAAEASRKKA LEAAICQAGV  240
WTGDADVKSA SPNDVLAMRS ALERVHAEVA ERLQEFMAEE AMMQLTASAG LFVADGGVSS  300
HHRDQVVMDE QKMVAMGGNV DHALPFAAMM LPLPPYDHCF DLNHGPHTIL QPGRRANYDQ  360
PMSSSPAASK L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-15120214192MEF2 CHIMERA
6bz1_B4e-15120214192MEF2 CHIMERA
6bz1_C4e-15120214192MEF2 CHIMERA
6bz1_D4e-15120214192MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00927.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813008.11e-51MADS-box protein AGL71-like
TrEMBLA0A1E5W0855e-55A0A1E5W085_9POAL; Uncharacterized protein
STRINGSb04g004410.16e-50(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-25AGAMOUS-like 62