PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00934.1.g00230.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 348aa MW: 36621.1 Da PI: 8.4872

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00934.1.g00230.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.6e-09	111	157	1	50
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 +r++h ++Er RR+++N+ ++ Lr+++ ++ + ++ + a+i A +Y Zpz_sc00934.1.g00230.1.sm.mk 111 QRMTHIAVERSRRKQMNEHLAVLRSVMLPS---YVQRGDQASIIGGALNY 157 79*************************9...99******9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.95E-13	109	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-10	109	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-9	109	166	No hit	No description
PROSITE profile	PS50888	13.325	110	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-7	111	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-5	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MAAAPGARGW NWPHAYGGIT EGAMDLEGAS ATTSFWDVGA SSAALVPEAG EPAGSSAAPP 60 PAQYGGLGGN VAAGAAEFAQ EGAAPMSPLL TGRRKRRRAR SVKNREEAES QRMTHIAVER 120 SRRKQMNEHL AVLRSVMLPS YVQRGDQASI IGGALNYDKE LEQLIQTLQA RKHARDNLSL 180 GVDVAAAVPF AGFFTFPQYA MSGTGGSPTA TNTVSVNCDS HGNDANGNDT PAAGSRQSSV 240 ADIEVTMVES HANLKVLSRR RPRQLLRVVA GLQGHRLTVL HLNVTSAGPM ALYSIGLKVE 300 DDCGLSSADD IAAAVHRIVE AVEREEGAAG RRRARVIGVT ECSSSRMS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MAAAPGARGW NWPHAYGGIT EGAMDLEGAS ATTSFWDVGA SSAALVPEAG EPAGSSAAPP  60
PAQYGGLGGN VAAGAAEFAQ EGAAPMSPLL TGRRKRRRAR SVKNREEAES QRMTHIAVER  120
SRRKQMNEHL AVLRSVMLPS YVQRGDQASI IGGALNYDKE LEQLIQTLQA RKHARDNLSL  180
GVDVAAAVPF AGFFTFPQYA MSGTGGSPTA TNTVSVNCDS HGNDANGNDT PAAGSRQSSV  240
ADIEVTMVES HANLKVLSRR RPRQLLRVVA GLQGHRLTVL HLNVTSAGPM ALYSIGLKVE  300
DDCGLSSADD IAAAVHRIVE AVEREEGAAG RRRARVIGVT ECSSSRMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	97	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00934.1.g00230.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973718.1	1e-101	transcription factor bHLH94
TrEMBL	A0A0A9VPC8	1e-126	A0A0A9VPC8_ARUDO; Uncharacterized protein
STRING	Si013925m	1e-100	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-64	bHLH family protein