PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00951.1.g00100.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 229aa    MW: 25252.7 Da    PI: 10.4215
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00951.1.g00100.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-104588147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  r  WT++E++++ +a +++G + WktI + +  ++t+ q++s+ qk+
  Zpz_sc00951.1.g00100.1.sm.mk 45 REEWTADEHDRF-HAMRMFGHD-WKTIGQFVA-TKTATQIRSHAQKH 88
                                  689********9.899****99.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.79E-123994IPR009057Homeodomain-like
PROSITE profilePS5129412.2074093IPR017930Myb domain
SMARTSM007173.8E-54491IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.0E-114491IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-44588IPR009057Homeodomain-like
PfamPF002495.4E-84588IPR001005SANT/Myb domain
CDDcd001671.93E-64789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSLTHDIARK VTTSARNLAG TPPAGSGKKK EKKKPRKPYT ISRPREEWTA DEHDRFHAMR  60
MFGHDWKTIG QFVATKTATQ IRSHAQKHFL KVHKLAGGLA APLPPLPRPR RATGAVLPRP  120
TAASSATSVN ALQSVMNWAP RSAACWSDRD DSTFTATPDR SEQEAWVADS LSQDDGTVEL  180
PLAPDDRRFA EVYRFVGDAF GSGAPCPVEV QLRRLRGMDP VVAETVLLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12836KKEKKKPRK
23037EKKKPRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00951.1.g00100.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.13e-56protein REVEILLE 8
TrEMBLA0A0D3G3K85e-55A0A0D3G3K8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PHY37e-55A0A0E0PHY3_ORYRU; Uncharacterized protein
TrEMBLB9FHP57e-55B9FHP5_ORYSJ; Uncharacterized protein
STRINGORUFI05G04560.11e-55(Oryza rufipogon)
STRINGOBART05G04360.19e-56(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.13e-21MYB_related family protein