PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00955.1.g00010.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 135aa MW: 15301.3 Da PI: 10.3666

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00955.1.g00010.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.4	4e-25	9	84	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++w+fF++r++++ +g r+ r+t sgyWkatg+ v+s+ ++++g k+t+vfy+grap+g+kt+W m+ey++ Zpz_sc00955.1.g00010.1.sm.mk 9 DPEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSWVFSSsANRVIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 84 4569**********************************9867788*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.57	1	114	IPR003441	NAC domain
SuperFamily	SSF101941	5.36E-28	7	113	IPR003441	NAC domain
Pfam	PF02365	7.6E-13	10	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MAGAANVSDP EQWFFFCPRA ERELHGGRPA RTTPSGYWKA TGSPSWVFSS SANRVIGEKR 60 TMVFYQGRAP TGTKTRWKMN EYKAVADPAV AVAVVPPRDI QLRNEFSVCR VYISTGTLRS 120 FDRRPLNHDD IHHHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-17	11	85	71	143	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-17	11	85	71	143	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-17	11	85	71	143	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-17	11	85	71	143	NO APICAL MERISTEM PROTEIN
3swm_A	3e-17	11	85	74	146	NAC domain-containing protein 19
3swm_B	3e-17	11	85	74	146	NAC domain-containing protein 19
3swm_C	3e-17	11	85	74	146	NAC domain-containing protein 19
3swm_D	3e-17	11	85	74	146	NAC domain-containing protein 19
3swp_A	3e-17	11	85	74	146	NAC domain-containing protein 19
3swp_B	3e-17	11	85	74	146	NAC domain-containing protein 19
3swp_C	3e-17	11	85	74	146	NAC domain-containing protein 19
3swp_D	3e-17	11	85	74	146	NAC domain-containing protein 19
4dul_A	3e-17	11	85	71	143	NAC domain-containing protein 19
4dul_B	3e-17	11	85	71	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00955.1.g00010.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC112209	1e-68	AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence.
GenBank	AK106277	1e-68	AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence.
GenBank	AK109939	1e-68	AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
GenBank	AP014967	1e-68	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	1e-68	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978711.1	5e-70	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-47	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	K3ZJF4	1e-68	K3ZJF4_SETIT; Uncharacterized protein
STRING	Si026707m	2e-69	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	7e-46	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]