PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00955.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 420aa    MW: 46184.1 Da    PI: 11.0583
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00955.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.64.7e-14360408249
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k 49 
                                   ppGfrF Pt+eel+ +yL+++++g + ++e++i+ vdiy+++P+dL+ +
  Zpz_sc00955.1.g00020.1.am.mk 360 PPGFRFYPTEEELLGFYLRHRLAGMRPDVERFIPVVDIYSYHPRDLQcN 408
                                   9****************************999**************843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-14357406IPR003441NAC domain
PROSITE profilePS5100517.184359420IPR003441NAC domain
PfamPF023658.6E-6360404IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
LRLKPHASLF SGHAGLRVCS TDSGKPQSTG RNEVNAAGLK VVDVGQPAHP AQEIHAGATP  60
HLGEAGHEAG DGLRGEGREG AMRERGRRDA EGGVRSGRHM RRGRCGAGKE RRGASRGRGG  120
SETLVEGALC RGAKARAGGG HYHCNLPRPR ERVAEQRHGR ATPSSSWKLA AITKAEAERR  180
SGAGATAASA RQLDTILWEI QDVVRVAGTG RRIRRRGRRA SGGDEACADA DRVSALCWRR  240
AVFPCHGQLD DGGRWLVKLP RPLATFSHTG YSWRARDSGI SHCSLRNSSI SRVVSRSRSG  300
SMDAPTSAMA VQRMQLLQNF FTLLWELLSR HQHHRPLYKY VQCMRLNMET TGGGVDPIFP  360
PGFRFYPTEE ELLGFYLRHR LAGMRPDVER FIPVVDIYSY HPRDLQCNQL DLQASNRSMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210218RRIRRRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00955.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1122094e-40AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence.
GenBankAK1062774e-40AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence.
GenBankAK1099394e-40AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
GenBankAP0149674e-40AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126194e-40CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-10NAC 007