PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00962.1.g00090.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 242aa    MW: 27187.6 Da    PI: 10.4088
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00962.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-15123206190
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   f+k++++s+v +  +l lp +f+++++ k  ++  +tl+de+ ++++ ++    ++++  l++GW +F+ ++g+++gD  v
  Zpz_sc00962.1.g00090.1.sm.mk 123 FVKAMLHSHVVRGFWLGLPSHFCDNYMPK--KDSIVTLMDENDQEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATV 197
                                   89*********************999755..4458***************..555555..9******************** PP

                                   EEE-SSSEE CS
                            B3  82 Fkldgrsef 90 
                                   F+l++ ++f
  Zpz_sc00962.1.g00090.1.sm.mk 198 FQLIKPTTF 206
                                   **9975555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-16114207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20116207IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-22121207No hitNo description
PfamPF023622.0E-13123206IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039123220IPR003340B3 DNA binding domain
SMARTSM010197.5E-15123220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAAVARQGMS AYEAAREKTV LENKRKIEAL NLHHLSAAIK MAPKTPSPMK QKRRRIIEAA  60
VVTPSPARRS RRLANLPEVK TPRKPTDSIY LARYGSISMK ARLEATRKAE ELESQLDPEI  120
PSFVKAMLHS HVVRGFWLGL PSHFCDNYMP KKDSIVTLMD ENDQEFDTNY LAYKKGLSGG  180
WAGFALSHGI RDGDATVFQL IKPTTFKSEQ LLMMTMRQPS WSIVVYTTSS PPSPLCTLRL  240
AI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00962.1.g00090.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797698.11e-130B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-120Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A2T7CGW71e-129A0A2T7CGW7_9POAL; Uncharacterized protein
STRINGSi037266m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-44B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]