PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00986.1.g00300.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 203aa MW: 22625.7 Da PI: 10.0237

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00986.1.g00300.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.2	2.4e-30	17	67	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQ Zpz_sc00986.1.g00300.1.sm.mk 17 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQ 67 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.654	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-29	14	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-21	17	67	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.27E-13	17	68	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-8	19	68	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-10	81	107	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MQGTYSGGMA ALSRDPKPRL RWTPDLHERF VDAVTKLGGP DKATPKSVLR LMGMKGLTLY 60 HLKSHLQDSL HKASVSPPQR LLVQKKLQMR IEAQGKYLKA ILEKAHKNIT FDANGSGNIE 120 STRSQLTDFN LALSGFVDNA THVYEENKGQ LVKAISNDID NHKDHHLSFR LYNAGSQEAK 180 DVKRTPETED TLLLDLNIKG GNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	17	67	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	17	67	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	17	67	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	17	67	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00986.1.g00300.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106400	8e-55	AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318852.1	2e-85	myb family transcription factor PHL11
Refseq	XP_021318853.1	2e-85	myb family transcription factor PHL11
Swissprot	C0SVS4	2e-43	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A0D9ZQ57	2e-86	A0A0D9ZQ57_9ORYZ; Uncharacterized protein
TrEMBL	Q7XPT2	2e-86	Q7XPT2_ORYSJ; OSJNBa0083N12.9 protein
STRING	OGLUM04G23960.1	3e-87	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-39	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]