PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00990.1.g00190.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 271aa    MW: 29607.2 Da    PI: 5.2042
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00990.1.g00190.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.18.2e-052082352754
                                     HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  27 aeereeLAkklgLterqVkvWFqNrRak 54 
                                     ++++++L +++gL+ +q+ +WF N+R +
  Zpz_sc00990.1.g00190.1.sm.mkhc 208 EDDKARLVQETGLQLKQINNWFINQRKR 235
                                     56778899999***************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193579IPR005540KNOX1
PfamPF037901.2E-163875IPR005540KNOX1
SMARTSM012566.2E-2689144IPR005541KNOX2
PfamPF037913.8E-1697143IPR005541KNOX2
PROSITE profilePS500719.216186239IPR001356Homeobox domain
SMARTSM003898.1E-4187243IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-13197240IPR009057Homeodomain-like
CDDcd000861.04E-7198240No hitNo description
SuperFamilySSF466891.15E-7200241IPR009057Homeodomain-like
PfamPF059202.6E-10208235IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAAFHYPDHG LSMDAAAAAA ASSPNPSGFS PGGGEREKAA IAAHPLYERL LEAHVACLRV  60
ATPVDQLPRI DAQIAARPPP LAAAAGAAAA GGPSGGEELD LFMTHYVLLL CSFKEQLQQH  120
VRVHAMEAVM GCWELEQSLQ SLTGASPGEG TGATMSDDED NQVDSEANMF DGNEGSDVMG  180
FGPLMLTEGE RSLVERVRQE LKNELKQEDD KARLVQETGL QLKQINNWFI NQRKRNWHSN  240
PTSSGEKTKK KRYPKEYHSW LRERLVLDCT V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232251RKRNWHSNPTSSGEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00990.1.g00190.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169973.11e-146putative knotted-like transcription factor family protein
SwissprotQ0E3C31e-141KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6ELG01e-145A0A3L6ELG0_MAIZE; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6QFP11e-145A0A3L6QFP1_PANMI; Putative knotted-like transcription factor family protein
TrEMBLC0PJP11e-145C0PJP1_MAIZE; Knotted related homeobox6
STRINGGRMZM2G370332_P021e-147(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-102KNOTTED1-like homeobox gene 3