PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01002.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 391aa    MW: 42058.1 Da    PI: 9.2854
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01002.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-184796255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Zpz_sc01002.1.g00140.1.am.mk 47 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 96
                                  799******.7*********32...35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.9E-134796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2747104IPR001471AP2/ERF domain
CDDcd000183.54E-2947103No hitNo description
PROSITE profilePS5103219.83647104IPR001471AP2/ERF domain
SMARTSM003801.2E-3347110IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1947104IPR016177DNA-binding domain
PRINTSPR003671.7E-74859IPR001471AP2/ERF domain
PRINTSPR003671.7E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MELQFQKPQS HAQQQQCQYQ AVSVVAKETA GKLSRARSKC GGGGGGKFVG VRQRPSGRWV  60
AEIKDTTQKI RMWLGTFETA EEAARAYDEA ACLLRGANTR TNFAAAGGAG SAPPVSPLAS  120
RIRALLHHKK FKKTVARQPD VAFSPPAAAA YRHGGGTGSV AATSTSASTV TTTTSSVSPS  180
SSPSSTTIKF AMTSGGIRTP ILPVPSHHTF TEESACYRPY LLTTGSDEFQ HQYEQSWTLN  240
TSSLPPTDGR DNACSRMPEL EKISPEKDGP ASPPHGEDRV QGGQDFFDAG NDASDSLVRT  300
FWVRFDLLDC SCRGANSVQK CMRKGEQQSR SPAVIAADQL AIAMATAGVS SAAERQRPSC  360
KEEVVQLSRL LGDSPSILAL QRFRWFPFYF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13461031371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01002.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042732e-57AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBankAP0149632e-57AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-57CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459520.22e-78ethylene-responsive transcription factor RAP2-11 isoform X1
TrEMBLA0A1B6Q9T24e-77A0A1B6Q9T2_SORBI; Uncharacterized protein
STRINGSb02g006023.18e-78(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11