PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01008.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 529aa    MW: 58081.9 Da    PI: 10.9872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01008.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08448488954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Zpz_sc01008.1.g00020.1.am.mk 448 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 488
                                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13440504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-14443500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5449488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-5461493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MRTAVDHMRR SVVRQRDALS LRVRFGLPGR RNVFGRSGFY RGYTYGRTVG SSTVTGLAKG  60
RVARGQANWP SDRNKMAPCD YSARKQNYLS TCTSTTYDSS ACLVTFRASQ PAGQARRKSK  120
RTRQTRRTDD EADEVGTFER APRLTLARDG SNPKKAACLP VAHHVPLTTK RASVDGCTTH  180
ELGRQLLLRY SAEGRAVGFD AGGVWSRTQS TGGKRTNGTC LYSTWSRACG RPRARSDRAP  240
RRRSRRVRNQ SAISPTRRSK AIVDCNMHVK SDRQQRLPRV KPSRAGESLP VAVAICFLDP  300
EAQLELMKTM LELEQLTALD QSLMAPMSPP ISPMQTPAAA QSHCFSPPPY MSPTIISTGS  360
PDGQYAAPAA YTAISGSEQH QQDHYVLSPG ADAPTGAMLG SSTSSADAMR EVMFHIAALQ  420
PVEIDPEAVR PPKRRNVRIS KDPQSVAARL RRERISERIR TLQRLVPGGT KMDTASMLDE  480
AIHYVKFLKS QVQSLERAAA ATHHAAALGA AYPAFHASWQ YALPHGGEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429434RPPKRR
2448453RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01008.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604771e-135AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence.
GenBankAK0704581e-135AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence.
GenBankAP0056551e-135AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07.
GenBankAP0060571e-135AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04.
GenBankAP0149651e-135AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.13e-39bHLH family protein