PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01018.1.g00090.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 350aa MW: 38419.6 Da PI: 10.9963

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01018.1.g00090.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+ +F r L H++ H Zpz_sc01018.1.g00090.1.am.mk 107 YPCAMCPLTFGRETALFGHMKAH 129 99*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.286	107	129	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAPKKEPSLS PLLPQYDAIG HRWIICSPSH SRLAQPCAKR VEGRISAGMK SEARPTSREL 60 AAIQRSSALQ ISLVGVSPHR EGKVVGGVNI NEPSIGGFVS SVDGQVYPCA MCPLTFGRET 120 ALFGHMKAHE RAVAVEVISP KRTSNNHHPK LKAAKEASCS VANMPFPKGW VATSRPGLCN 180 HVRTGLRVGL ELVRNLKLAR VVVSHGYPIT STWRMAATLG IAFLLLGYGV VPAHESPRKS 240 CLLEVNPPKT TRNNHHPKLK AVKKEASGSV ADMTLPKGWV ATSRCCLRCI MLSWIHHQQL 300 QRWHAWCEAN HASWRISWGS GVLRGAPYTD PAWKSSSSSS YKRRRRPSPR

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAPKKEPSLS PLLPQYDAIG HRWIICSPSH SRLAQPCAKR VEGRISAGMK SEARPTSREL  60
AAIQRSSALQ ISLVGVSPHR EGKVVGGVNI NEPSIGGFVS SVDGQVYPCA MCPLTFGRET  120
ALFGHMKAHE RAVAVEVISP KRTSNNHHPK LKAAKEASCS VANMPFPKGW VATSRPGLCN  180
HVRTGLRVGL ELVRNLKLAR VVVSHGYPIT STWRMAATLG IAFLLLGYGV VPAHESPRKS  240
CLLEVNPPKT TRNNHHPKLK AVKKEASGSV ADMTLPKGWV ATSRCCLRCI MLSWIHHQQL  300
QRWHAWCEAN HASWRISWGS GVLRGAPYTD PAWKSSSSSS YKRRRRPSPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01018.1.g00090.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28588	2	2