PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01022.1.g00170.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 230aa    MW: 24303.3 Da    PI: 6.343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01022.1.g00170.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52e-07127153531
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkas 31 
                                     h+++Er RR+ri +++  L+el+P+  
  Zpz_sc01022.1.g00170.1.sm.mkhc 127 HSIAERLRRERIAERIRALQELVPNTN 153
                                     99**********************952 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-7120154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.791122186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-5127153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-7127158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAGQQPPGGS EDDFLEHLFT FPTAGAGGHA GAGGGGGGDH PFPLALSLDA AAEASGAAKP  60
DRDPVQLAGL FPPVFAGAGG MQQTNLCPPP PHQVFHAQPK PGEGAMAQPP APRPKVRARR  120
GQATDPHSIA ERLRRERIAE RIRALQELVP NTNKGEASDG GSTQHIWEKW STDGTEKQVA  180
KLMEEDIGAA MQFLQSKALC MMPISLAMAI YDTQHPQEHH PLKPEPNSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01022.1.g00170.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-114transcription factor UNE12
SwissprotO227682e-39UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2S3GW171e-112A0A2S3GW17_9POAL; Uncharacterized protein
STRINGPavir.J03221.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-28bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]