PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01041.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 550aa    MW: 59977.9 Da    PI: 7.0089
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01041.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.91.5e-85254703374
                          GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlar.svselykal.ppsetseknsseela 79 
                                   ++L +cA +v++g++e+a ++Lar     a  +g  p +Rla  f+  La+r+ r + + +++al  pse    +   + +
  Zpz_sc01041.1.g00220.1.am.mk  25 KALRDCAAHVEAGSTERAASCLARATGPaAVLAGnVPQRRLAVPFVDCLARRMIRpMDPAIADALiDPSECI--DRRCVRS 103
                                   68999*******************99884667775699*****************67777777775555554..5666678 PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeerv..HiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgske 156
                                   a++l++e+sP++k ++++ N+aI eave+e+ v  H+iDf   + q+ QW+ Ll+ +  R+e++p+lR+T+v+s    + e
  Zpz_sc01041.1.g00220.1.am.mk 104 ARRLLFELSPFPKAAFVVSNSAIIEAVENEKVVnvHVIDFAgpAAQPNQWIELLHDFHRRREDAPHLRMTVVHS----DGE 180
                                   99****************************76555*****75589*****************************....9** PP

                          GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll................... 214
                                    l +  e   + A++l++ f++++ va +le+l+l++L    ++k+gEa a+ +  qlhrll                   
  Zpz_sc01041.1.g00220.1.am.mk 181 FLAKASELVVDEADRLNMAFQIHT-VAGQLETLDLDDLhgvlHLKSGEARAIICTQQLHRLLaapdetaptsgfvsaarhf 260
                                   ************************.7999****9999876668999*********************************** PP

                          GRAS 215 ...............................................desvsleserdevLklvkslsPkvvvvveqeadh 248
                                                                                    +++++ +  ++L++ ++l Pkv+vv+eq+adh
  Zpz_sc01041.1.g00220.1.am.mk 261 nqmatiarlqqvaststsssascgedtdahhtrspatplcfvsppasTPPLQMPAALASFLRAARGLAPKVMVVTEQDADH 341
                                   *********************************************88666677778888********************** PP

                          GRAS 249 nsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                                   n++sF +rf++aleyy+a++ sl+a +++      e + vE+++l++ei++v+  ega+rrerh +l+kW +rle aGF++
  Zpz_sc01041.1.g00220.1.am.mk 342 NGASFRKRFADALEYYAAVYCSLAAAAAAYRrpaAELAEVEQAVLAEEIRDVLLREGASRRERHDRLQKWAARLEVAGFRN 422
                                   ***********************666444333448999******************************************* PP

                          GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   vpls+ a+   + +l +++++g +  e +g+l+l+W + pL+svSaWr
  Zpz_sc01041.1.g00220.1.am.mk 423 VPLSYVAMRRGNEMLGRCGVRGCESAELRGCLLLCWCSCPLYSVSAWR 470
                                   ***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.6091450IPR005202Transcription factor GRAS
PfamPF035145.2E-8325470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MHRPENDGAA RGPWADDDNI SHLGKALRDC AAHVEAGSTE RAASCLARAT GPAAVLAGNV  60
PQRRLAVPFV DCLARRMIRP MDPAIADALI DPSECIDRRC VRSARRLLFE LSPFPKAAFV  120
VSNSAIIEAV ENEKVVNVHV IDFAGPAAQP NQWIELLHDF HRRREDAPHL RMTVVHSDGE  180
FLAKASELVV DEADRLNMAF QIHTVAGQLE TLDLDDLHGV LHLKSGEARA IICTQQLHRL  240
LAAPDETAPT SGFVSAARHF NQMATIARLQ QVASTSTSSS ASCGEDTDAH HTRSPATPLC  300
FVSPPASTPP LQMPAALASF LRAARGLAPK VMVVTEQDAD HNGASFRKRF ADALEYYAAV  360
YCSLAAAAAA YRRPAAELAE VEQAVLAEEI RDVLLREGAS RRERHDRLQK WAARLEVAGF  420
RNVPLSYVAM RRGNEMLGRC GVRGCESAEL RGCLLLCWCS CPLYSVSAWR PDPGEAAGDT  480
EYLSPPSQVP HRRLNDAQPP GQCRQCRTPG RRDADGEHGG TAEAQSRRRR PDLLPPKILF  540
DRLGTTSSPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-17327471241380Protein SCARECROW
5b3h_A3e-17327471240379Protein SCARECROW
5b3h_D3e-17327471240379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01041.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980153.20.0scarecrow-like protein 3
TrEMBLA0A1E5WC770.0A0A1E5WC77_9POAL; Scarecrow-like protein 3
STRINGSi028262m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-67scarecrow-like 3