PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01042.1.g00250.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 399aa    MW: 42953.2 Da    PI: 6.5529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01042.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-1465116155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+l+P+a   + ++ + a+i+  A+e++k+L+
  Zpz_sc01042.1.g00250.1.am.mk  65 QRMTHIAVERNRRRQMNEYLAVLRSLMPEA---YVQRGDQASIVGGAIEFVKELE 116
                                   79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1863137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-1463120No hitNo description
PROSITE profilePS5088815.40864115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1165116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1565135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-1270121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSALVDALCA PSSDAALIFD PLNAASAASF LFDNAAFCDA GIALGAAPRR RRARSCKSME  60
EAESQRMTHI AVERNRRRQM NEYLAVLRSL MPEAYVQRGD QASIVGGAIE FVKELEQQLQ  120
SLEAQKRTLA HHHQHYKAKP DAAASTPTTC VVESATTTTT TSNCSSSVAE DAHSVDAPPF  180
ARFFMYPQYV WCHQSPRELP AEDGGGRAGV ADIEVSLVET HASVRVMAPR RPAQLLRMVA  240
GLQALRLPVL HLTVTTLDTL ALYSLSVKLD ASPDLSMSLA AVSASTARQS GHCAERIVIE  300
IGMEKWDREK ATPRPQAMYM LLCLLPSPCV ILATVSSGHR TCTQARSGCQ LFHLCLPQVE  360
EGCGLPTADD IAAAVHHVLC IIDADAVAQE MLALGAVGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16576RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01042.1.g00250.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947132e-91FP094713.1 Phyllostachys edulis cDNA clone: bphyst031k14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623756.11e-107transcription factor bHLH96
TrEMBLA0A0E0CU841e-106A0A0E0CU84_9ORYZ; Uncharacterized protein
STRINGPavir.Ab02502.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-39bHLH family protein