PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01065.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 759aa    MW: 81095.5 Da    PI: 6.8064
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01065.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.91.6e-2989173187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en++k++k++ke++ +r  ++ +t+++
  Zpz_sc01065.1.g00130.1.am.mk  89 RWPRQETLALLKIRQDMDAAFRDATLKGPLWEQVSRKLAEQGYNRSAKKCKEKFENVHKYHKRTKESRAGR--NDGKTYRF 167
                                   8********************************************************************97..56668*** PP

                      trihelix  82 fdqlea 87 
                                   f+qlea
  Zpz_sc01065.1.g00130.1.am.mk 168 FTQLEA 173
                                   ****85 PP
2trihelix105.63.4e-33469555187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k ev+aLi++r+++++r+++   k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+k  ++k+++e+s+tcpy
  Zpz_sc01065.1.g00130.1.am.mk 469 RWPKAEVHALIQLRSNLDTRYQEVGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKGESNKKRPEDSKTCPY 549
                                   8****************************************************************9999999********* PP

                      trihelix  82 fdqlea 87 
                                   f+ql+a
  Zpz_sc01065.1.g00130.1.am.mk 550 FHQLDA 555
                                   ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.3E-486148IPR001005SANT/Myb domain
PfamPF138376.8E-2088174No hitNo description
PROSITE profilePS500906.92288146IPR017877Myb-like domain
CDDcd122033.96E-2688153No hitNo description
SMARTSM007170.0092466528IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-4467525IPR009057Homeodomain-like
PROSITE profilePS500907.155468526IPR017877Myb-like domain
PfamPF138372.4E-22468556No hitNo description
CDDcd122031.52E-29468533No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MQQQQQGGGG GAGGAAQQFG VQQVEMPPPF SPPGQRISVA EAPSPISSRP PAQHQLDELG  60
TVAGGFDAEG LAAAAAGEEG ASGGSAGNRW PRQETLALLK IRQDMDAAFR DATLKGPLWE  120
QVSRKLAEQG YNRSAKKCKE KFENVHKYHK RTKESRAGRN DGKTYRFFTQ LEALHHATGS  180
PASAAPSPVT SFAPPSTAVG VSGPLPMRAP AEPSPSVSAG LGGVGMRTMG NMSFSTSNTE  240
DYSDDEDSDD EGTQELGEGA DERGKRKRLS EGGAAAGGSG GGKMMRFFEG MMKQVMERQE  300
AMHQRFLEAI EKREQERMIR EEAWRRQEMA RLAREQEILA QERAMAASRD AAVLSFIQKV  360
TGQTIPMPSI AAPAINIMPP PSSHPPPQPH PTAAASASPA PPPSQPPASQ TPPPQPQPSP  420
QSQKSQQPAT PQVPPTQQQS SDFVMTPADA PHADTSGHDG SGGGATSSRW PKAEVHALIQ  480
LRSNLDTRYQ EVGPKGPLWE EISAGMRRLG YNRNAKRCKE KWENINKYFK KVKGESNKKR  540
PEDSKTCPYF HQLDALYRNK ALSSSGAGAA MHAHASSAPQ EAVTVTAATP ISQTPPPPPP  600
PQPSQQSSQH AAKSGHGNGG SVASEHGGSG SGGMQMQTTN GSVAAAKKPE DMMKKMMEQR  660
RQQPQVASSY NRIDGGADSD NMDEDEDYDD DDDEDDVDGN KMQYEIQFQH HHQQQQQQPQ  720
QHQNVVRPNS GGGGGNPTGT AAPTSTAATT TGSFLGMVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01065.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612051e-127BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
SwissprotQ391172e-64TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2S3IKR80.0A0A2S3IKR8_9POAL; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-70Trihelix family protein