PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01067.1.g00260.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Whirly
Protein Properties Length: 694aa    MW: 75324.2 Da    PI: 10.1618
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01067.1.g00260.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly60.34e-19539591153
                        Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkq 53 
                                   s+yk+kaal+ +++ p+f+ ldsg+ k+ ++G +ll++a+a+a r+ydW +kq
  Zpz_sc01067.1.g00260.1.am.mk 539 SIYKGKAALSFDPRPPQFVPLDSGAYKVAKEGCVLLQFAPAVASRQYDWTRKQ 591
                                   79**************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.559.103.1E-193136IPR023213Chloramphenicol acetyltransferase-like domain
PfamPF024581.2E-551132IPR003480Transferase
PfamPF024584.2E-10208346IPR003480Transferase
Gene3DG3DSA:3.30.559.107.6E-22238363IPR023213Chloramphenicol acetyltransferase-like domain
Gene3DG3DSA:2.30.31.102.2E-25527591IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.26E-20532591IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.7E-18540591IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MSPRVRVLSV THVQPDQATG PPPRDAEHAI KLSLFDTMFE RDDLPLLPSL SRSLRSALAA  60
TLAVFTPLAS KLTSTLPASS DEVFIDCSPD GVAPGVRFVE AEYAGGDMRR LAADAEHDVA  120
TFLQLVPDLP VGKLPASLAG PGLEPPTFDR AVINRHPKAE ESSPTSANHN SNIAISSTTT  180
TASHHLLHRR YFHHPQCRGN KLNAALTLPE PSPPPPQMTR TSTGHRRSST QLSLTASTRR  240
KTYLLTADEI RSLKQRISRQ SSDGKTEAPT THAAIASLIW TSVVRAKNSS KNYADDNDVY  300
LMFATDCRSR LSRPSGDAFF SNCVWSCYVR ATAGQLRGGR LAHAVAAVRA DQEDGDPLAD  360
AGRWIELYRA FSREHVTQIG ASHWFAGEFV SLRGARDGEG QVSVALDRGH MDGFEASLLS  420
QLQGSARPPK PHQSLTTDKP HPSDQAPFGE MPPPPPLFLS LPSPALMPVH LPKSAQTVSV  480
ASPFPSSRKP ALPACSVASP RHSDYFDPRA PPPPPPRGNG YGRPPPNGAL DGRVFTSYSI  540
YKGKAALSFD PRPPQFVPLD SGAYKVAKEG CVLLQFAPAV ASRQYDWTRK QDPRSYSRPQ  600
SGPEFEWQSH RAIPPGLRKI KSWRPAEARS SCTILPRCPT RSAAAALTTR VAESYLCHLR  660
RSLPSPTSPL PRPRLSARGR SVSSPLSTRL SPVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A4e-215335913795p24: plant transcriptional regulator PBF-2
1l3a_B4e-215335913795p24: plant transcriptional regulator PBF-2
1l3a_C4e-215335913795p24: plant transcriptional regulator PBF-2
1l3a_D4e-215335913795p24: plant transcriptional regulator PBF-2
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01067.1.g00260.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537952e-43AK353795.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002M22.
GenBankAK3654522e-43AK365452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812632.11e-80anthocyanin 5-aromatic acyltransferase-like
TrEMBLA0A2T7E3332e-79A0A2T7E333_9POAL; Uncharacterized protein
TrEMBLA0A2T8JEU22e-79A0A2T8JEU2_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP384123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-20ssDNA-binding transcriptional regulator