PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01070.1.g00120.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 177aa    MW: 19025 Da    PI: 5.2694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01070.1.g00120.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-1785130147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+W+ eEd  l + v++lG ++W++Iar ++ gR++k+c++rw + 
  Zpz_sc01070.1.g00120.1.sm.mk  85 RGPWSSEEDAVLSNMVEKLGARNWTLIARGIP-GRSGKSCRLRWCNQ 130
                                   89******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.90480135IPR017930Myb domain
SMARTSM007177.4E-1484133IPR001005SANT/Myb domain
PfamPF002492.6E-1685130IPR001005SANT/Myb domain
SuperFamilySSF466893.52E-1786141IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-2286141IPR009057Homeodomain-like
CDDcd001671.81E-1487129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSDETAVPPP PPSDPPAAAD AVAAHPYTAD ESQAPTEPQP EPQPQPHYSS PPPSGDDDDV  60
SIISAPSALG DIAPARAAAR EERVRGPWSS EEDAVLSNMV EKLGARNWTL IARGIPGRSG  120
KSCRLRWCNQ LDPQVKRKPF TGTLLSASIR GGPHYNSRSC SSWEQVGSYR KAFGWEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1584141663B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01070.1.g00120.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543181e-53BT054318.1 Zea mays full-length cDNA clone ZM_BFb0295C09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458769.13e-44transcription factor MYB1
TrEMBLA0A0A8ZM403e-45A0A0A8ZM40_ARUDO; Uncharacterized protein
STRINGSb03g039950.11e-43(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4078322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-28myb domain protein 109