PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01075.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 278aa    MW: 30959.3 Da    PI: 12.0797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01075.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.6e-24212260250
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   rien   rqvtfskRr g+ KKA EL vLCd++va++ifs +gk+++++
  Zpz_sc01075.1.g00030.1.am.mk 212 RIENAVSRQVTFSKRRRGLAKKARELAVLCDVDVALLIFSDKGKFHDFA 260
                                   8**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-29203262IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.833203263IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-24204263IPR002100Transcription factor, MADS-box
PROSITE patternPS003500205259IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-25205225IPR002100Transcription factor, MADS-box
PfamPF003193.1E-23212259IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-25225240IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-25240261IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVIMHLAVTA HAKIWRWISR RRREVMLGGA WAWETQITNG SSSNQTSIPH RRSIAGQPRG  60
QGSRWWRRSA GVSTAALYLV RGRGGSSCHG LLMESEDQGT LVPYLLLETQ ESVRDPSGPS  120
SRRAVRASGA GQRRAAACPR WPPRPTRCRQ RPAEQERGQD DDTPLVNRAT VAVDVSAYEA  180
ALLLAKPASR RRRRDTGEGM MGRGRGRVEV RRIENAVSRQ VTFSKRRRGL AKKARELAVL  240
CDVDVALLIF SDKGKFHDFA AHGRYAAGRS PLFRATRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01075.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7585522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.16e-10AGAMOUS-like 20