PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01076.1.g00080.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 184aa    MW: 19603.4 Da    PI: 7.9028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01076.1.g00080.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.5e-05146174330
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPk.a 30 
                                   ++    Er+RR r+ +++ +Lr l+P+  
  Zpz_sc01076.1.g00080.1.sm.mk 146 AKTVVLERKRRVRMTEKLYQLRLLVPNiT 174
                                   555679********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-5141176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-5141174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-4141177No hitNo description
PROSITE profilePS508889143184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MERHLLPPQQ HLMPSSGFFN LSGGGVEHFP SCGGCGFAAT PVGLLHDCGW AGEHPMQLGA  60
EMFGGGVSTV GGALVGNQAV WQCVDGSSSR DPPQAPAGII SLDGDGDDGR PPLAVTERES  120
VPELAAEPRR NEGNVVMGAK KRKDRAKTVV LERKRRVRMT EKLYQLRLLV PNITKVSAPK  180
LCPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140155KRKDRAKTVVLERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01076.1.g00080.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-09FER-like regulator of iron uptake