PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01078.1.g00210.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 255aa    MW: 28458.5 Da    PI: 9.6435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01078.1.g00210.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-32177235159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  Zpz_sc01078.1.g00210.1.am.mk 177 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 235
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33162235IPR003657WRKY domain
SuperFamilySSF1182902.48E-28169235IPR003657WRKY domain
PROSITE profilePS5081128.92172234IPR003657WRKY domain
SMARTSM007741.4E-37177236IPR003657WRKY domain
PfamPF031064.8E-25178234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MERSSQLETC LPSLYGLSPC APPHRRLAPL PNDNKLLQMP LVHEQAGNHG VMLNSSDNDG  60
GLYPLLLPGI PFCPSSSVSC DKPTGFAPLD AVEVNDDAPQ GVMLWRAPRQ RKPAAKSLVI  120
SRSQVATARV HGMPAARVQN RWKGPATAAD KGRTMKVRRK MREPRFCFQT RSDVDVLDDG  180
YKWRKYGQKV VKNSLHPRSY YRCTHSNCRV KKRVERLSED CRMVITTYEG RHTHTPCSDD  240
ADGTDHTGSC AFTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24168234874Probable WRKY transcription factor 4
2lex_A2e-24168234874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01078.1.g00210.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654321e-119EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825009.11e-105probable WRKY transcription factor 12
TrEMBLA0A2T7CY651e-105A0A2T7CY65_9POAL; Uncharacterized protein
STRINGSi030985m1e-101(Setaria italica)
STRINGTraes_2AL_B1270662B.11e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.13e-58WRKY family protein