PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01095.1.g00230.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 216aa    MW: 23499.6 Da    PI: 4.7543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01095.1.g00230.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-0680921426
                                  --TTTTT-SS-SS CS
                       zf-CCCH 14 tCkyGdrCkFaHg 26
                                   C++G+ C FaHg
  Zpz_sc01095.1.g00230.1.sm.mk 80 ACPRGNACAFAHG 92
                                  8***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.7E-47996IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVSREQNHSH DYEHLMLDPV ALGVSWAEPA ALDIPPPLLA ALVEYLSAAG GGDWDAEADD  60
EFMISAGARE RGATTGRRAA CPRGNACAFA HGTFELWLHP SRYRTRACRA GVSCRRRVCF  120
FAHTAAELRA APKVEESPLS LSPKSTLASL WESPPVSPVQ GRRWIDAADE ADEMEDLMLA  180
MRELSFRKAA ASSAPVLPLV TEEDGPDLGW VSELVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01095.1.g00230.1.sm.mk
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303637.14e-98zinc finger CCCH domain-containing protein 37-like
SwissprotQ65X921e-83C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1Z5R4P21e-96A0A1Z5R4P2_SORBI; Uncharacterized protein
STRINGGRMZM2G004795_P018e-83(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.25e-19C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]