PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01124.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 338aa    MW: 37146.5 Da    PI: 6.2518
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01124.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg W++eEde+l++++  +G g+W+ ++ + g+ R++k+c++rw +yl
  Zpz_sc01124.1.g00100.1.am.mk 14 RGLWSPEEDEKLIRYISTHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61
                                  788*******************************************97 PP
2Myb_DNA-binding54.33.2e-1767111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rgr+++eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
  Zpz_sc01124.1.g00100.1.am.mk  67 RGRFSAEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                                   89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.363961IPR017930Myb domain
SuperFamilySSF466891.01E-2911108IPR009057Homeodomain-like
SMARTSM007179.8E-131363IPR001005SANT/Myb domain
PfamPF002491.9E-151461IPR001005SANT/Myb domain
CDDcd001673.02E-121761No hitNo description
PROSITE profilePS5129425.4962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2565116IPR009057Homeodomain-like
SMARTSM007174.4E-1766114IPR001005SANT/Myb domain
PfamPF002497.9E-1667111IPR001005SANT/Myb domain
CDDcd001673.77E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIS THGYGCWSEV PDKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF SAEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPT  120
STTSSSSVSP PCSTVTAASD AAHGHLQTLP FSVADNQLDA MIINQGLALP SSTKLAVAGQ  180
DSPLTAPLPP QHCPFFMFDT SVSPPSSLSP TTAAQLQHPF LTFTTAAVDV PSYQLPPLVD  240
GMSMNMSALD CSSLGDHERG HDHDGNNGQA GPGMSSNGGC CGYEQQEQQQ QLGHDQWDDE  300
SAQHLLMWDD DQELTPPNLE VMQTGAHSLL FMGPNDHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01124.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919261e-156FP091926.1 Phyllostachys edulis cDNA clone: bphylf039g20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822193.11e-162myb-related protein 308
SwissprotQ8VZQ23e-63MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A2T7D3G11e-173A0A2T7D3G1_9POAL; Uncharacterized protein
STRINGPavir.Fb00364.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.14e-83myb domain protein 103
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]