PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01131.1.g00140.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 443aa    MW: 48520.4 Da    PI: 4.8624
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01131.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-143582249
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  +ien+  r+vtf kRr g+ K A  LS  ++a+vav++ s++gk+  +
  Zpz_sc01131.1.g00140.1.sm.mk 35 FIENDKDRSVTFFKRRSGLHKAATDLSSFTGAKVAVVVESESGKVSSF 82
                                  8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-121885IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.6472686IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-72848IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-163296IPR002100Transcription factor, MADS-box
PfamPF003199.7E-173582IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-74863IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-76384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MYLQISVENR RESHNRRVER NTIAIRRPRR SGINFIENDK DRSVTFFKRR SGLHKAATDL  60
SSFTGAKVAV VVESESGKVS SFGTPSANPI IEAFLSGRAP ADPAADDPET ARITELQDEL  120
YQLDKERLVM EKRAKQSKAR FKKIEETSSV RKLLDNDVED LSADELRELL RGLVQLGEGV  180
NAQVNANSQV EISGQGGPSL PFSSSSSRLP SQINMPPRHL PLAPLHASSQ RPQSSWERFL  240
PSSISRSSLL PPAIPPMHHQ AQMLPVPVPP GNEAHRYSYY FPQEQPSRQV DLAPNHAYAD  300
NVDYFNPVAP PAQKHASYTY NFNLNPVAAP QVDQNDANSN DLAADGQPPD AYRWAPASPG  360
NQEYHSYLRG LCVELGLTDD SGDQDAAAAA AGGGGDQENV PDRADDGMNQ QADEIADDDW  420
LNMSLWDFST FPGDNPGGAA GNN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01131.1.g00140.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.17e-06M-type_MADS family protein