PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01141.1.g00100.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 701aa MW: 77129.8 Da PI: 10.7238

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01141.1.g00100.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.6e-05	258	282	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 +kC C + F+r ++L+ H+rt H Zpz_sc01141.1.g00100.1.am.mk 258 HKCAACFRQFNRMEHLVEHMRTarH 282 79*******************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	12.05	258	287	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	260	282	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.420.10	1.2E-27	373	534	IPR012337	Ribonuclease H-like domain
SMART	SM00479	1.6E-12	373	533	IPR013520	Exonuclease, RNase T/DNA polymerase III
SuperFamily	SSF53098	1.52E-15	379	528	IPR012337	Ribonuclease H-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MTPLQLSILT KNQRQLKEPY NTTESKDKNS GRSGVADHGC RAVASSSLCA SWRRPCKLGA 60 VNPSGGRSRQ RDEGPRASPP HVDTRVALAL SLRDRLIAIG KATRTRTHEQ QLDICRVPIW 120 MHPATAAGSG DRDGGKARRG MFTAYPARNR SARANDLAAG RRRPGLFVSA FGRGSHLNLL 180 HLKKSSRRWQ RATHCRKTQK GQQPCCQWVT RRCGAEHRCK RHLSNRLPRE NRSRARRPAG 240 CCPPINWHPC AALRCRRHKC AACFRQFNRM EHLVEHMRTA RHSAHEPRCD VCFKRRRSFE 300 ALRDHLGAGG SSLPNSAHCA TVFAARGCTL CLGVFPTAAR LSEHRAHCQL SRTTTPTLLS 360 MSRLQIGGQG GGGALALGCK MVGAGSDGSL DVCARVCLVD ERESVVFETF VKPLVPVTHY 420 RYERTGIRPE HLRACGVTVK QAQELVQEFL LNGEQPWKVR TSRGRARVLV GHGLDHDLDA 480 LGFDYPAYLK RDTATFLTRT YLGYDIQTGH QHPDEDCVAA MRLYQRMRAL PHRKGDGEGA 540 AAGAVTASAV DNAFPAWRQR ELERMTPEEL LQLSTPDYYC CATELVRPEV PPDGGTLRRL 600 TAAPPPHLAE AEAARHHGPP PSGGPFPRQR SHQAAPSPDG KLDGGALRRP PSPTANLHYC 660 SRRRQATTAP PDGGPSPDGR PPRPLPTAAP PPHLAATAKH P

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MTPLQLSILT KNQRQLKEPY NTTESKDKNS GRSGVADHGC RAVASSSLCA SWRRPCKLGA  60
VNPSGGRSRQ RDEGPRASPP HVDTRVALAL SLRDRLIAIG KATRTRTHEQ QLDICRVPIW  120
MHPATAAGSG DRDGGKARRG MFTAYPARNR SARANDLAAG RRRPGLFVSA FGRGSHLNLL  180
HLKKSSRRWQ RATHCRKTQK GQQPCCQWVT RRCGAEHRCK RHLSNRLPRE NRSRARRPAG  240
CCPPINWHPC AALRCRRHKC AACFRQFNRM EHLVEHMRTA RHSAHEPRCD VCFKRRRSFE  300
ALRDHLGAGG SSLPNSAHCA TVFAARGCTL CLGVFPTAAR LSEHRAHCQL SRTTTPTLLS  360
MSRLQIGGQG GGGALALGCK MVGAGSDGSL DVCARVCLVD ERESVVFETF VKPLVPVTHY  420
RYERTGIRPE HLRACGVTVK QAQELVQEFL LNGEQPWKVR TSRGRARVLV GHGLDHDLDA  480
LGFDYPAYLK RDTATFLTRT YLGYDIQTGH QHPDEDCVAA MRLYQRMRAL PHRKGDGEGA  540
AAGAVTASAV DNAFPAWRQR ELERMTPEEL LQLSTPDYYC CATELVRPEV PPDGGTLRRL  600
TAAPPPHLAE AEAARHHGPP PSGGPFPRQR SHQAAPSPDG KLDGGALRRP PSPTANLHYC  660
SRRRQATTAP PDGGPSPDGR PPRPLPTAAP PPHLAATAKH P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01141.1.g00100.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947861	2e-52	EU947861.1 Zea mays clone 363790 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2146	5	5