PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01141.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 302aa    MW: 31485.4 Da    PI: 7.6429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01141.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.5e-0638105554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksL 54 
                                    +e+Er RR++++s   +L +l+Pk                     +    ++    L +A  YIk+L
  Zpz_sc01141.1.g00140.1.am.mk  38 RKEIERMRRQHMKSLCTKLVSLIPKEHysskvigailhlslllpeIGILDTMTQLGSLDEAAAYIKKL 105
                                   579**********************5447777777777777766544444456666667777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-825117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.98133105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-438109No hitNo description
Gene3DG3DSA:4.10.280.101.5E-938119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEKAKKSSSS DTAAAGGKKS STSNNNSGSS GTTAAVERKE IERMRRQHMK SLCTKLVSLI  60
PKEHYSSKVI GAILHLSLLL PEIGILDTMT QLGSLDEAAA YIKKLKERVD DLQQKRSSAQ  120
LLASLRGGGV GASTSAAAAT VSSDAGSSEE AAVVAEDEAV APVVELRHRE DDSSLDVVLI  180
SSVDRPFKMH EVVTVLEEEG AEIINANFSV AGGKIFYTIH SRLVGVRVLA EHAAALRASA  240
PAVTVVSSSA DTSSPAGTVA CVRHTGRRQH GYASRGRVAR CGQASADDDA LMCRSGGDGL  300
SG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01141.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277514e-39KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818432.17e-71transcription factor bHLH162-like
TrEMBLA0A1E5VNC89e-72A0A1E5VNC8_9POAL; Uncharacterized protein
STRINGPavir.Ea00786.1.p4e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-07bHLH family protein