PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01146.1.g00260.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 251aa MW: 26853.6 Da PI: 10.8239

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01146.1.g00260.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H +H Zpz_sc01146.1.g00260.1.sm.mk 42 FVCKTCGRAFATFQALGGHRTSH 64 89*********999998888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.616	42	69	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-9	42	66	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.07E-7	42	114	No hit	No description
SMART	SM00355	0.38	42	64	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.9E-9	92	117	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.201	92	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.94	92	114	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MTKHPRDAGD SVPLSLSLSL ALGGEGRAKK LRGRAAGDDG EFVCKTCGRA FATFQALGGH 60 RTSHLRGRHH GGLALGLASA APGKAEKPAA SHECGFCGAA FEMGQALGGH MRRHREEAAA 120 SAQAPPVLLQ LFVAQRKICQ YFLQLIHQKA QPDANFRGSP RASSVADRRQ IDTVRSLADT 180 SAGVRFRSAS DRPRHITAFW KSRPCHTSPG GAHTYPLLLR IALPVYFSDG DTGRPIKPAA 240 ETPIASRYCA R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01146.1.g00260.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198420.1	2e-44	zinc finger protein ZAT8-like
TrEMBL	A0A3B6LWG6	4e-44	A0A3B6LWG6_WHEAT; Uncharacterized protein
TrEMBL	A0A446UTV6	4e-44	A0A446UTV6_TRITD; Uncharacterized protein
STRING	Traes_5BL_B038BE0A3.1	7e-45	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1305	30	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	3e-12	C2H2 family protein