PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01164.1.g00250.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 220aa    MW: 23792.9 Da    PI: 10.3632
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01164.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP79.64.4e-2571119250
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 
                                   C vegC+adls++++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsr+ 
  Zpz_sc01164.1.g00250.1.am.mk  71 CAVEGCAADLSKCRDYHRRHKVCEAHSKTPVVIVAGQQQRFCQQCSRYA 119
                                   ***********************************************95 PP
2SBP43.39.6e-141912194775
                                   SSEEETTT--SS--S-STTTT-------S CS
                           SBP  47 srfhelsefDeekrsCrrrLakhnerrrk 75 
                                   s fh l efDe krsCr+rL++hn+rrrk
  Zpz_sc01164.1.g00250.1.am.mk 191 SSFHLLGEFDEIKRSCRKRLDGHNRRRRK 219
                                   89**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-2563118IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.97368150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-2369119IPR004333Transcription factor, SBP-box
PfamPF031101.4E-1771118IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.545142220IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.7E-4190207IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-10191219IPR004333Transcription factor, SBP-box
PfamPF031101.3E-7191219IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDWDAKMPSW DLGTVVGPSS GNGGGGGGTL DLKLGRPTSW KAAAPLPPPP SSSAPAKRPR  60
SGRAQQAVPA CAVEGCAADL SKCRDYHRRH KVCEAHSKTP VVIVAGQQQR FCQQCSRYAR  120
TLTGPEETLV ELAASTRARA SWASPQQRND AAGAVELDSW VDASGRFQGS RGQQIQLCSP  180
MCVRVSLSSL SSFHLLGEFD EIKRSCRKRL DGHNRRRRKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-1771118653squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01164.1.g00250.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061672e-63AP006167.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1455F06.
GenBankAP0129182e-63AP012918.1 Oryza sativa Indica Group DNA, chromosome 1, BAC clone: K0158A04, cultivar: Kasalath, complete sequence.
GenBankAP0149572e-63AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-63CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8291152e-63CT829115.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674641.12e-44squamosa promoter-binding-like protein 2
SwissprotQ0JGI15e-42SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A3S6H6592e-53A0A3S6H659_9POAL; Squamosa-promoter binding protein-like protein
STRINGGRMZM5G878561_P013e-55(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-21SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]