PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01167.1.g00020.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 229aa MW: 25452.7 Da PI: 9.814

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01167.1.g00020.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.5	9.2e-13	117	189	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 +fY++YA+++GF+vrk++ +k+ ++ge+ +++fvC+keg+++ +k+ ++k+ +++++ + +++v+k+k Zpz_sc01167.1.g00020.1.sm.mk 117 EFYKNYAQKLGFTVRKRYANKNMKTGEVNSSRFVCYKEGFKAMDKRVnHSKTPQPNVTPWGDVALEMNVEKRK 189 6*****************************************9998732233333333333344455555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-11	117	189	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MWTNWVSGPS ARRPGSAVPV CAVPHRSQPL HERPHSLLTR GILAQSRPRN SQPVPMCSQA 60 PQSQSVPPSP AAQSPTAGDT NAVHIEAVRS IGSSQTVHGD YTPRLGQEFV SNEEAYEFYK 120 NYAQKLGFTV RKRYANKNMK TGEVNSSRFV CYKEGFKAMD KRVNHSKTPQ PNVTPWGDVA 180 LEMNVEKRKE MGHTRFVEIN NFITNMDLIL SGGMDKVDNL HNHGLEALG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01167.1.g00020.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0HYL2	1e-29	A0A0E0HYL2_ORYNI; Uncharacterized protein
STRING	ONIVA07G07180.1	2e-30	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17298	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-10	FAR1-related sequence 10