PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01168.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 700aa    MW: 75224.4 Da    PI: 10.1281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01168.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059332354123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C  Cgk F +   L  H+ +H
  Zpz_sc01168.1.g00050.1.am.mk 332 FRCALCGKAFASYQALGGHMASH 354
                                   89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.3E-11332356IPR007087Zinc finger, C2H2
SMARTSM003550.017332354IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575332359IPR007087Zinc finger, C2H2
SuperFamilySSF576672.17E-7332406No hitNo description
PROSITE patternPS000280334354IPR007087Zinc finger, C2H2
PfamPF139122.7E-7383406IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93384411IPR007087Zinc finger, C2H2
SMARTSM003553.1384406IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280386406IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MHTHTYAQTH MTGAVCSKED WSSTSSSDQA AHASRCFESR EPSRNGDRTP MVKGAATRRH  60
YLPCSVAVAD GSVDQVVVVA SQGPPGPRPL ASCRAVRHRS GKVHGLGDQS VADDRLSRDA  120
NFVRAALLIN ARRGGAGVSR GGSGGWWWWW QLGPDARGLT QANAVELVSG VVATAAQVRG  180
PAAATTSRQG VTSVEFRFSY HQLLASSSRA GDFKRYSVFI SVIKVRGRSS ELDPDKRQPT  240
AAVHRRACAP SNICYQSPDS RDHLITRISF SSLVPRRLVG PITSRWVMRQ GEYLSLCLTA  300
LAAACRAEHR VHGAPQPSAP APVTSSAPPL DFRCALCGKA FASYQALGGH MASHRKPGTA  360
PPFVQNEDAT PSAAGEEGEP RRRHVCTVCR RGFATGQALG GHKRFHYLHG PSVSASLRTE  420
AGSRAGWFDL NVAPVDCVKG DDEGEETQSR CAPAKKKQRR GPGKTGRQPW TQDTTGPLLP  480
SALAVAASLP YPVLVVSTSL WCRLLPPTDG TKSYSWFQIL NDSMLCHLFP CVLGWLVDVD  540
PNHVAPTQIF VPVSERELQY SGHSPAPLRL CEMPNLPIAA AATTTNPPFL AAQRTKTIMV  600
GTRPAGDSGV PINAARTQRL TIDAQLGTAN FSGPFSGWSG LQLRIVLALV PASVTGGVHS  660
GLRKQYFGAV KSCIIPSWFM DRLGYHGDMQ SGKILQFSKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01168.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432381e-38AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.14e-21zinc-finger protein 3