PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01172.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 107aa    MW: 11732.6 Da    PI: 10.1644
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01172.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.2e-274291251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  rie+ + rqvtfskRr g+lKKA+ELSvLCdaev +i+fs++ +ly ++s
  Zpz_sc01172.1.g00010.1.sm.mk 42 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVGLIVFSPRSRLYQFPS 91
                                  8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.7543393IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-323392IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-273555IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003589IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-253591IPR002100Transcription factor, MADS-box
PfamPF003191.6E-254289IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-275570IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-277091IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MVATAAMAAE VAPSPEGGDQ IVVEAPDGRK KLGRRGRREM RRIEDATSRQ VTFSKRRSGL  60
LKKAFELSVL CDAEVGLIVF SPRSRLYQFP SAIEYVLPLL PCPSPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-172892159Myocyte-specific enhancer factor 2A
3kov_B1e-172892159Myocyte-specific enhancer factor 2A
3kov_I1e-172892159Myocyte-specific enhancer factor 2A
3kov_J1e-172892159Myocyte-specific enhancer factor 2A
3mu6_A6e-182892159Myocyte-specific enhancer factor 2A
3mu6_B6e-182892159Myocyte-specific enhancer factor 2A
3mu6_C6e-182892159Myocyte-specific enhancer factor 2A
3mu6_D6e-182892159Myocyte-specific enhancer factor 2A
3p57_A1e-172892159Myocyte-specific enhancer factor 2A
3p57_B1e-172892159Myocyte-specific enhancer factor 2A
3p57_C1e-172892159Myocyte-specific enhancer factor 2A
3p57_D1e-172892159Myocyte-specific enhancer factor 2A
3p57_I1e-172892159Myocyte-specific enhancer factor 2A
3p57_J1e-172892159Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01172.1.g00010.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020261770.14e-29MADS-box transcription factor 50-like
SwissprotO827439e-28AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A1E5VTG73e-31A0A1E5VTG7_9POAL; MADS-box protein SOC1
STRINGSi038299m5e-28(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-25AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]