PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01180.1.g00100.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 259aa    MW: 29818.4 Da    PI: 6.2227
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01180.1.g00100.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB59.96e-193731585
                           NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                                    +i+k++lP + ++++d+++++ e  +efi +++se+++ c re++kti+++ +l al++lGf +y++++ +
  Zpz_sc01180.1.g00100.1.am.mkhc  3 KIIKEMLPPDVRVARDTQDLLVESCVEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYIDEVYA 73
                                    89*****************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.58E-282120IPR009072Histone-fold
PfamPF008082.9E-15359IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.9E-303120IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFKIIKEMLP PDVRVARDTQ DLLVESCVEF INLLSSESNE VCSREEKKTI APEHVLKALS  60
DLGFREYIDE VYAAYEQHKL ETMDSPKAGK FIGVEMTEEE AAAEQQRMFA EARARMNNGA  120
AKPKELEQEP QQQQQQPPQI QLQMQDPQHH PMQSQQQLHP PPQQSIQPQL QFHQPPQHSF  180
QPQAQVHAQP QHPPHLQQQS QLEPSQPQLQ PHMQPQQSPQ VQQNPLPGQH SQAQIRLHPQ  240
PQQPPHAQSQ QTPHLQLQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B4e-26311323133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01180.1.g00100.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235094.13e-87nuclear transcription factor Y subunit beta
TrEMBLI1I6Q37e-86I1I6Q3_BRADI; Uncharacterized protein
STRINGBRADI3G34930.11e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.46e-47nuclear factor Y, subunit B13