PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01182.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 398aa    MW: 41852.6 Da    PI: 7.0426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01182.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13114163355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zpz_sc01182.1.g00120.1.am.mk 114 TSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVNYIKELQ 163
                                   68*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-17114186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-14114167No hitNo description
PfamPF000101.4E-10114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13114175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PRINTSPR012174.2E-9185197No hitNo description
PRINTSPR012174.2E-9198219No hitNo description
PRINTSPR012174.2E-9219235No hitNo description
PRINTSPR012174.2E-9252277No hitNo description
PROSITE profilePS516718.696332398IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAEALCDQLF ADDVLDGELH HHPSYTEDLF GILEAWEDCV SGGSSVNTPR GGGVDARGSK  60
RRPPQGGCDV DSRDPDDGSS MVVQEPAKRQ RCSPAPVAVV STAGEGGAGK ATATSHIAVE  120
RNRRKQMNEH LAVLRSLMPC FYVKRGDQAS IIGGVVNYIK ELQQLLQSLE AKKQRKAYAD  180
QVLSPRPPPA CCSPRPPLSP RPPLPFKSTP PMSPRPAVPI SPRTPPTTSS SPYNKLICRQ  240
PSLSLPLPLP LPLPLPLPPA PGSAYASPAT TPTTSQESAA AASSYLPSLD AIAAELCAYA  300
ANGKQQATAP AGGGGVVVLP EVKVEFSGAN LVVKTVSQRA PGQAVKVIAA LEGRSLEILH  360
AKISTVDDTA VNSFTIKIGI ECDLSAEELV QEIQQAFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01182.1.g00120.1.am.mk
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437061.11e-155transcription factor SPEECHLESS
TrEMBLA0A0A9GJA91e-155A0A0A9GJA9_ARUDO; Uncharacterized protein
STRINGSb10g020490.11e-155(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-34bHLH family protein