PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01185.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 806aa    MW: 88420.7 Da    PI: 10.0368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01185.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-17535584255
                                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Zpz_sc01185.1.g00060.1.sm.mkhc 535 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLSEVIEYIRFLQ 584
                                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.6E-24532605IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.079533583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18533607IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-15535584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-15535588No hitNo description
SMARTSM003532.5E-13539589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MGGDVIPVSR FLCRHRHHQA SKRLSIRTRP EVAVGKGMAL WNLAATGHMT HLDPCSDPST  60
DPYPRTTDFL PGPGRAGACR DGTDGSATLS EREPPHSGVS LFFYPPIHGM LIISGLRCRR  120
GCARIAPNRH NTTTSACARV NCYCRSSREH RGQLKPGTCS ISVPNQTRAA NARHGYAVTE  180
TEKRFCYKCR IKRPGTGRVK RRGQRGVEER AGPLPGVAAR GQRDLLSPSV SFHSSTHFAP  240
QFSSELELGA EALLLRLLLS PSRVRRRCNA WLWGCKVLPP ARRRLLEPFF SRVAVGDFFD  300
DLRRGDKATH DFLSLYSAAK DAAALPLIPD SKKVPAPPSQ GFFLKTHDFL QPLERPLSPT  360
PPPQQPAAEK LVNARHALPG GAGTFSISSP AAAVPGAVKQ EPVFALWGQP EPRGHQWALP  420
FAAAHCVAVA SARPQQQQQQ QMPLERKADG GFMDAGSGSS GGAGFDDDDC HAARREVSSS  480
LKGDASVLRN PRLLRGSLVP FWRPDGGREL TVRVETKGGS CSGSAGTDQM PNTPRSKHSA  540
TEQRRRSKIN DRFQILREIL PQNDQKRDKA SFLSEVIEYI RFLQEKVQKY EVSQQEWNQE  600
NAKVVPWSNI YFRSFWKNAQ NKDETNGDTT SDPSRIIKNA SSPGFPFAVK PGDEQELSEA  660
NKKGCVPYRE ADTPSNIPND VASQKQAELA KPLPAEDRAV NSQMLKDPEL AIDEGTISLS  720
SQYSQGLLAT LNHALQNSGI DLSQASISVQ INLGKRAIKR PAASANCTSE DLTSQISYDQ  780
AIRQQQKSGD GALEHPQAMK RHKSDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01185.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822754.10.0transcription factor BIM1-like isoform X1
TrEMBLA0A2T7D8Q50.0A0A2T7D8Q5_9POAL; Uncharacterized protein
STRINGSi013622m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-46BES1-interacting Myc-like protein 2