PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01197.1.g00080.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 280aa    MW: 30550.8 Da    PI: 6.0451
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01197.1.g00080.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09215249238
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                                     ++WT eE +ll+++++++  + W+ Ia ++g +++  
  Zpz_sc01197.1.g00080.1.sm.mkhc 215 DKWTDEETLLLLEGIEKYNDN-WDDIAGHVG-TKSKA 249
                                     69****************977.*********.88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129316.304212259IPR017884SANT domain
SMARTSM007178.0E-4213255IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-9214262IPR009057Homeodomain-like
PfamPF002492.1E-8215250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-6215250IPR009057Homeodomain-like
CDDcd001673.80E-8216262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MPRKASKASD SRLKWRKRKR NPDASPSKPS ASATVDDHSD GSDYDEDATA APGDGANDAA  60
AAPAGTRGSE DPALDLREVE VLSSVEVVSV FPSAKRRVVN RPHPSVLALL DAERSAHSGD  120
GSATSVAPAV ENISHGQLQV LSVVFPDHPS LTTDPEKPSL YVCTPPPLME GHGVPKQFEG  180
RLHVVPKHSE WFTPGTVHRL ERQRVDGEKD GSDSDKWTDE ETLLLLEGIE KYNDNWDDIA  240
GHVGTKSKAQ YEISPVRCHW NQSAWKHHAI LPIQSSKYEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01197.1.g00080.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0547782e-44BT054778.1 Zea mays full-length cDNA clone ZM_BFb0042C04 mRNA, complete cds.
GenBankEU9488692e-44EU948869.1 Zea mays clone 388231 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826971.19e-88SWI/SNF complex subunit SWI3C-like isoform X1
RefseqXP_025826972.11e-87SWI/SNF complex subunit SWI3C-like isoform X2
TrEMBLA0A2T7CKY12e-86A0A2T7CKY1_9POAL; Uncharacterized protein
STRINGPavir.Hb01654.1.p1e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP269247