PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01212.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 607aa    MW: 64852.7 Da    PI: 7.8483
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01212.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.57.8e-374495491101
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk +rrkC++dC+lapyfpa++p+++a+v+++FGasn+ ++l++lp +er +a++++++eA  r++dPvyG++gvi 
  Zpz_sc01212.1.g00230.1.am.mk 449 RCAACKNQRRKCSRDCILAPYFPASDPQRYACVQRVFGASNIARVLQSLPVHERGNAADTMAMEAYRRVQDPVYGCAGVIV 529
                                   6******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkeel 101
                                   +lq++++ +++ela++++++
  Zpz_sc01212.1.g00230.1.am.mk 530 RLQEEIRAAQSELARTQAQI 549
                                   ***************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.630.101.1E-467117No hitNo description
SuperFamilySSF520254.45E-42113298No hitNo description
Gene3DG3DSA:3.50.30.301.1E-36147298No hitNo description
PROSITE profilePS5089124.066448549IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-36449546IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAHSSSHPGP MARLPSGSAR FLVAFGLLLL VSLLVVHRRP ALTGNSGGRH PDPAALFLSL  60
SAGANATIAA DLRALTAGPH LAGTRAAAGP ADYVLARFRA AGLQTLTREY QPLLSYPSRA  120
SLALLRRDGS LLGRLSVDEP ADVGRRLMQP YHAYAPSGEA VAEAVFVNLG REEDYLALER  180
LGVAVRGRIA LAVRGGGYRG GVVARAAERG AVAVLIAGHA DGGVERGTVL LSGPGDPLTP  240
GWAATPQAER FGFDHEAVKQ RFPKIPSMPI SFKTAVAIIQ TLHGQAIPAE WKTNLGVDEG  300
CVKDPDVMGK MVHDTWKEMD GSINLYSPPE DYESKLSFFP GIADIISRLG NVTVEEHSLF  360
TSIWSAAAAF SPLTISASCS RAGRMQTTDQ AFAVDETLTP SRSPDHTPLA QRRHSKISPF  420
PAWNLAVAPS NHIMSMSANA EASATPSRRC AACKNQRRKC SRDCILAPYF PASDPQRYAC  480
VQRVFGASNI ARVLQSLPVH ERGNAADTMA MEAYRRVQDP VYGCAGVIVR LQEEIRAAQS  540
ELARTQAQIA THQLMNAQVP APPPPPSPQQ QAGDALTVQQ EPFQGLDALL LDDARPGETL  600
FDDDMSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-2845054412113LOB family transfactor Ramosa2.1
5ly0_B5e-2845054412113LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01212.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP803867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.13e-38LOB domain-containing protein 23