PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01213.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 607aa    MW: 64183.7 Da    PI: 10.3901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01213.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16403448555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Zpz_sc01213.1.g00140.1.am.mk 403 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 448
                                   *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-17396462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.025398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-19401471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-13403448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-17403452No hitNo description
SMARTSM003531.2E-18404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MWKRRRLRAR LRLTKPRPLA ASSSSVPSLS LPPPPPIRTP GHAHHRSTVR AAWLPPHTTP  60
RTHRRQCFKY LLLRAIRSPR PPHRASTRAL AARSNRALPA SLTAAPVSSR LTSSHATGRG  120
GGAAEMNQCV PSWDLDDAAA GGLNTASAAT DGVHHRAGVD GAGYYDVAEL TWEKGNISSH  180
GLLNRPAPTK CPPAASSTPL QALGGGGEPA GGGDRETLEA VVGEAAARSH FPAQPSLPTT  240
PWLGVGVPLP AEALVPCATR DDQAAEEEAR RKRARGVGED GHGLVCASQG STAPGRRGES  300
ALPELDAACG IGDDDVCGFT TTTNNSTSLD RDDNKGSPDT ENTSISGGAS DSRCFSLRSQ  360
ANCLLITLPR DGLCDEGENV VINGEPAMRS SVSTKRSRAA AIHNESERKR RDRINQKMKT  420
LQKLVPNSSK TDKASMLDEV IDYLKQLQAQ VQVMSRMSSM MMPMAMPQLQ MSVMAQMAQM  480
AQMAQMAQGM MNMGSLSQPG YVPPPMMHPP PPPFVPLPWD AGAAGASSGA GAVXXXXAAA  540
PPLRTPSRPS SRANKRSRMA RYVMQPQIVS ALSSSRAMRG TDEVKFRAAA AATGLHGGVQ  600
QDVGDVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126KRRRL
2310RRRLRARL
3406411ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01213.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614201e-111AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBankAK3678141e-111AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983681.11e-140transcription factor UNE10 isoform X1
TrEMBLK4A8X81e-138K4A8X8_SETIT; Uncharacterized protein
STRINGSi035334m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-33bHLH family protein